Saturation TCR analysis report

Published

November 12, 2025

Repertoire report generated with SatTCR

Analysis statistics

Sample	Sequencing		# clonotypes			Shannon div		Clonality		D50
Sample	Depth	Trim¹	Complete	Complete >= 5)	Ratio	Complete	Complete >= 5)	Complete	Complete >= 5)	Complete	Complete >= 5)
sample1	364,450	1	13,210	7,101	53.75%	86.75%	87.35%	13.25%	12.65%	1,049	655
sample2	470,981	0	14,982	8,984	59.97%	86.62%	87.25%	13.38%	12.75%	1,155	802
¹ # of trimmed sequences

Appendix

Expand for Session Info

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.5.1 (2025-06-13)
 os       Ubuntu 20.04.6 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       UTC
 date     2025-11-12
 pandoc   2.5 @ /usr/bin/ (via rmarkdown)
 quarto   1.4.549

─ Packages ───────────────────────────────────────────────────────────────────
 package     * version date (UTC) lib source
 dplyr       * 1.1.4   2023-11-17 [1] CRAN (R 4.5.1)
 forcats     * 1.0.0   2023-01-29 [2] RSPM (R 4.2.0)
 ggplot2     * 3.4.4   2023-10-12 [1] CRAN (R 4.5.1)
 gt          * 1.0.0   2025-04-05 [2] RSPM (R 4.4.0)
 lubridate   * 1.9.4   2024-12-08 [2] RSPM (R 4.4.0)
 purrr       * 1.0.4   2025-02-05 [2] RSPM (R 4.4.0)
 readr       * 2.1.5   2024-01-10 [2] RSPM (R 4.3.0)
 sessioninfo * 1.2.3   2025-02-05 [2] RSPM (R 4.4.0)
 stringr     * 1.6.0   2025-11-04 [1] CRAN (R 4.5.1)
 tibble      * 3.3.0   2025-06-08 [2] RSPM (R 4.5.0)
 tidyr       * 1.3.1   2024-01-24 [2] RSPM (R 4.3.0)
 tidyverse   * 2.0.0   2023-02-22 [2] RSPM (R 4.2.0)
 yaml        * 2.3.10  2024-07-26 [2] RSPM (R 4.4.0)

 [1] /usr/local/lib/R/site-library
 [2] /usr/lib/R/site-library
 [3] /usr/lib/R/library
 * ── Packages attached to the search path.

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